Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs4805954 | chr19:34414358 | T/C | 3.9E-7 | 484 | 15.9 | 16.13 | 17.13 | KM Plot |
| THCA | rs4805955 | chr19:34414365 | A/C | 2.93E-8 | 490 | 15.48 | 16.4 | 14.67 | KM Plot |
| THCA | rs4809262 | chr20:61489101 | G/C | 5.03E-5 | 479 | 15.15 | 17 | 14.55 | KM Plot |
| THCA | rs4809425 | chr20:61481641 | C/A | 4.38E-5 | 483 | 15.07 | 17.47 | 14.55 | KM Plot |
| THCA | rs4809428 | chr20:61491090 | T/G | 5.05E-5 | 478 | 15.15 | 17.23 | 14.55 | KM Plot |
| THCA | rs4809430 | chr20:61493572 | A/G | 5.0E-5 | 480 | 15.17 | 17 | 14.55 | KM Plot |
| THCA | rs4809432 | chr20:61495984 | A/T | 4.33E-5 | 490 | 15.17 | 16.8 | 14.55 | KM Plot |
| THCA | rs4817763 | chr21:37417475 | T/C | 2.92E-5 | 490 | 16.67 | 13.5 | 12.82 | KM Plot |
| THCA | rs4817767 | chr21:37453128 | A/C | 0.000122 | 478 | 16.63 | 14.33 | 9.73 | KM Plot |
| THCA | rs4817770 | chr21:37461348 | C/T | 0.000107 | 486 | 16.63 | 14.43 | 9.73 | KM Plot |
| THCA | rs4840973 | chr8:8355528 | C/T | 7.31E-14 | 465 | 16.8 | 15.7 | 8.38 | KM Plot |
| THCA | rs484626 | chr11:104898792 | G/C | 1.68E-6 | 489 | 15.9 | 16.4 | 11.47 | KM Plot |
| THCA | rs4862670 | chr4:187145423 | A/T | 3.8E-5 | 487 | 16.87 | 15.57 | 15.87 | KM Plot |
| THCA | rs487174 | chr1:46009536 | C/T | 5.44E-8 | 490 | 16.38 | 13.7 | 4.07 | KM Plot |
| THCA | rs4873197 | chr8:52437084 | A/G | 2.5E-6 | 484 | 14.92 | 18.03 | 19.72 | KM Plot |